Skip to contents

Standardise names using the citeseq data set

Source: R/renameADT.R
matchToCiteseq.Rd

Groups antibody names and selects the most frequent name. By default, the citeseq dataset is grouped by Antigen, Clone, Cat_Number (catalog number) and ALT_ID.

Usage

matchToCiteseq(x, cols = NULL, verbose = TRUE, ...)

Arguments

x

A data.frame or tibble containing a column "Antigen" to match to the citeseq data set

cols

(character(n), default NULL) Optional additional columns to use for matching in citeseq data set. ID columns from the citeseq dataset are used by default. Antibodies are grouped by a match in any of the ID columns.

verbose

Report which columns are used for matching? (default: TRUE)

...

Options passed on to getCommonName